| Name: | Herbert J. Bernstein | Date: | 12 Feb 2020 |
| Birthdate: | 26 September 1944 | Birthplace: | Brooklyn, New York |
| Notes: | U. S. citizen |
|
|
Ph.D. 1968, Mathematics, New York University, Graduate School of Arts and Sciences.
M.S. 1965, Mathematics, New York University, Graduate School of Arts and Sciences.
B.A., magna cum laude with honors in Mathematics, 1964, New York University, Washington Square College of Arts and Science.
Research Scholar (May 2018 -- ), Ronin Institute for Independent Scholarship, Montclair, NJ 07043, working at Brookhaven National Laboratory, Upton, NY 11973
Research Professor (April 2015 -- August 2019) Consultant (August 2019 -- ), Rochester Institute of Technology, Rochester, NY 14623, working at Brookhaven National Laboratory, Upton, NY 11973
Research Collaborator (November 1997 -- ), Brookhaven National Laboratory, Upton, NY 11973.
Consultant in matters related to computers and mathematics (1982 -- ), Managing Partner, Bernstein + Sons, 5 Brewster Lane, Bellport, NY 11713. Have consulted on computer hardware and software issues, including database design, networking, laboratory automation, legal and business questions for 48 years, drawing on more than 55 years of personal experience with computers.
Continuous scientific publication record for 55 years.
Lab Automation (1970 -- ) Work on a wide range of computer-related hardware in support of experimental data collection, including analysis and design of power and grounding circuitry, passive and active signal interface logic, network wiring. Designed the grounding system for the meterology building (Bldg 051) at BNL to resolve issues of equipment damage from lightening strikes. Designed and built a computer-based airborne LSI-11 based data acquisition system for sampling airborne plumes. Redesigned the card-reader feed fault logic for the CDC 6600 1200 cpm card-reader. Analyzed and resolved the reverse-creep errors in the CDC 6600 magnetic tape drives. Have assembled, disassembled and reorganized computer systems from embedded processors to servers to supercomputers.
CBFlib (1998 -- ) In collaboration with Paul Ellis (1998 -- 2002) and others since then, develop and maintain software API for imgCIF.
RasMol (1997 -- ) On a handoff from the original developer, R. Sayle who created RasMol in 1992, and in collaboration with others maintain and extend the molecular graphics program, RasMol.
NearTree (2009 -- ) In collaboration with Lawrence Andrews maintain and extend the NearTree package for nearest neighbor searching.
BGAOL (2010 -- ) In collaboration with Lawrence Andrews maintain and extend the Bravais General Analysis Of Lattices (BGAOL) software for crystallographic lattice identification.
Have engaged in a wide range of international software engineering collaborations since the early 1970's.
Languages: C, C++, python, java, Visual Basic, assemblers for a variety of processors, Fortran, perl, awk, HTML, SETL, Pascal, C, Basic, Forth, HyperTalk, CDC Compass, DEC Macro 11, MAP, FAP, SNOBOL, PL/I and others.
Have worked in UNIX, NT, Windows 95, MS-DOS, OS/2, VMS, MVS and other operating systems and network environments, on networks and communications code, rms drivers, time-sharing systems, lab automation, major mathematical codes, etc. Have electronics and logic design experience.
Note: Between Dowling College from 2002 to 2015, Rochester Institute of Technology from 2015 to 2019, and Ronin Institute for Independent Scholarship from 2018 to the present, have had 18 years of continuous external grant funding.
PI/PD (Oct 2014 -- Sep 2020) grant from DECTRIS of Baden-Dättwil, Switzerland for research on "Extensions and Improvements to Detector Data Formats." Total Award Amount 2014 -- 2020: $150,000. The goal of this project is extensions and improvements to detector data formats with emphasis on interoperation of CBF and HDF5 via CBFlib, combining the crash recovery of CBF with the performance of HDF5, optimizing compression for high pixel-density MX data in EIGER support, and validation of Eiger HDF5 datasets.
Co-PI (Jul 2015 -- Jun 2017, Sep 2017 -- Aug 2019) Consultant (Aug 2019 -- Aug 2020) grants DUE-1503811 and DUE-1709170 from NSF for "Collaborative Research:
Using protein function prediction to promote hypothesis-driven thinking in undergraduate
biochemistry education", with Paul Craig, PI, Jeffrey L. Mills, Co-PI, Suzanne O'Handley, Co-PI.
Total RIT Award Amount 2015 -- 2020 $208,374.
There are collaborative awards to
SUNY College at Oswego
(DUE-1709355, Sep 2017 -- Aug 2020), Julia Koeppe, PI, $26,948,
Ursinus College
(DUE-1709805, Sep 2017 -- Aug 2020), Rebecca Roberts, PI, $28,531,
(DUE-1503699, Jul 2015 -- Jun 2017), Rebecca Roberts, PI, $32,467,
Hope College
(DUE-1709278, Sep 2017 -- Aug 2020), Michael Pikaart, PI, $28,129,
(DUE-1503710, Jul 2015 -- Jun 2017), Michael Pikaart, PI, $21,227,
Purdue University
(DUE-1710051, Sep 2017 -- Aug 2020), Trevor Anderson, PI, $60,000,
(DUE-1503798, Jul 2015 -- Jun 2017), Trevor Anderson, PI, $23,974,
California Polytechnic State University Foundation
(DUE-1710538, Sep 2017 -- Aug 2020), Anya Goodman, PI, Eric Jones, Co-PI, $29,001,
(DUE-1503676, Jul 2015 -- Jun 2017), Anya Goodman, PI, Ashley McDonald, Co-PI, $36,294,
St Mary's University San Antonio
(DUE-1709592, Sep 2017 -- Aug 2020), Susan Colette Daubner, PI, $29,985,
(DUE-1502720, Jul 2015 -- Jun 2017), Susan Colette Daubner, PI, $25,594,
Oral Roberts University
(DUE-1503734, Jul 2015 - Jun 2017), Robert Stewart, PI, $23,783
Co-Investigator and sub-award PI (Aug 2018 -- July 2020) subaward to 1R21GM129570 (Alexei Soares, PI) "Detecting Elusive Biologically Significant Structural Differences with Serial Crystallography." Total Subaward Amount 2018 -- 2020: $110,880. The goals of this project are to produce a new parametrizable software framework combining the most sensitive and effective clustering techniques, firstly to detect structural differences among XFEL and synchrotron stills or synchrotron wedges and then to detect intensity similarities that will produce reasonably pure data to be merged and solved as single-species datasets or a single-state dataset. These will enable the recognition of species in polymorphs, elucidation of state sequences, and recognition of differing ligands, as well as removal of datasets that might corrupt the single-species and single-state datasets. Our tools will leverage the investment in modern high-brilliance x-ray facilities (synchrotrons and XFELs) that can obtain data from proteins in different conformational and/or dynamic states. We will begin exploring potential strategies for optimal clustering using a two-stage approach that generates initial clusters using cell dimensions and then refines the clusters using intensities.
| Spring 2017 | BIOL 670 | Statistical Analysis for Bioinformatics (online course) |
| Spring 2017 | BIOL 689.01 | Rational Drug Design -- Bioinformatics (special topics, online course) |
| Spring 2017 | CHEM 789.03 | Rational Drug Design -- Cheminformatics (special topics, online course) |
| Fall 2016 | BIOL 635 | Bioinformatics Seminar (online course) |
| Spring 2016 | BIOL 670 | Statistical Analysis for Bioinformatics (online course) |
| Fall 2015 | BIOL 635 | Bioinformatics Seminar (online course) |
NSF Graduate Fellow, GSAS/New York University, 1966 -- 67.
NSF Cooperative Graduate Fellow, GSAS/New York University, 1964 -- 65, 1965 -- 66.
New York State Regents Science Scholarship, WSC/NYU, 1961 -- 64.
Honorary Societies
Phi Beta Kappa, Pi Mu Epsilon, Sigma Pi Sigma
Professional Societies
(1962 -- ) Mathematical Association of America (Life Member)
(1963 -- ) American Mathematical Society (Life Member)
(1974 -- ) American Crystallographic Association
(1978 -- ) Mathematical Association (UK) (Life Member)
(1983 -- ) Society for Industrial and Applied Mathematics
(1990 -- ) London Mathematical Society
(1996 -- ) British Crystallographic Association
(2019 -- ) International Society for Biocuration
| Reviewer | (1975 -- ) | Math Reviews. 1 - 2 reviews per year |
| Chair Elect | (2020) | Best Practices Special Interest Group |
| American Crystallographic Association | ||
| Member | (1999 -- ) | Committee for the Maintenance |
| of the CIF Standard (COMCIFS) | ||
| International Union of Crystallography (IUCr) | ||
| Member | (2017 -- ) | IUCr Committee on Data (IUcr CommDat) |
| International Union of Crystallography (IUCr) | ||
| Member | (2012 -- ) | NeXus International Advisory Committee (NIAC) |
| Member | (Aug 2017 -- ) | Committee on Data COMMDAT) |
| International Union of Crystallography (IUCr) | ||
| Chair | (1998 -- ) | Image CIF (imgCIF/CBF) Dictionary Maintenance Group (IUCr) |
| Member | (2001 -- ) | Endowment Fund Committee and Cultural Enrichment Committee, |
| Temple Beth El, Patchogue, NY |
Subaward PI and Co-Investigator (Sep 2017 -- Aug 2019), subaward to 5R01GM117126 (Nicholas K. Sauter, PI), "DIALS: New Computational Methods to Enable Challenging Crystallographic Experiments." Total Subaward Amount 2017 -- 2019: $91,000. Goals: For 2017-2018 subaward, instrument and test the best available version of Andrews-Bernstein Niggli-reduction-based NCDist in the context of cctbx and the nightly build system. For 2018-2019 subaward, improve the speed of Andrews-Bernstein Niggli-reduction-based NCDist by conversion to Delaunay reduction, forming "D7Dist" which involves only 7 boundary cases instead of 15, reducing the number of cases to be handled by a ratio of 49 to 225.
At Dowling College from 2002 through 2015, brought in $1,365,389 of continuous research funding, $31,259 of workshop funding and helped bring in $292,187 of scholarship funding.
PI/PD with P. Craig (Co-PI) (Aug 2006 -- Aug 2015) on multiple awards on grant R15GM078077
from NIH/National Institute of General Medical Sciences. Total Award Amount 2006 -- 2015: $854,711.
| "Algorithmic Assignment of Probable Function to Proteins of Previously Unknown Function", 2011 -- 2014 renewal, Grant 2R15GM078077-02 (MPI). | |
| Supplements, 2011, Grant 3R15GM078077-02S1, 2013, Grant 3R15GM078077-02S2, Grant 3R15GM078077-02S3. | |
| "SBEVSL -- Structural Biology Extensible Visualization Scripting Language" 2006 -- 2011, Grant 1R15GM078077-01. | |
| Supplement for summer student research program, 2009, Grant 3R15GM078077-01S1. |
PI/PD with R. Sweet (Jan 2006 -- Dec 2008) "Workshop -- imgCIF: The Management of Synchrotron Image Data, A Series of Three Workshops" project, supported by the Office of Science (BER), U.S. Department of Energy, Grant No. ER64212-1027708-0011962 (Jan 2006 -- Dec 2008), the National Science Foundation, Grant No. DBI-0610407 (Jun 2006 -- Dec 2007) and the National Institute of Research Resources, Grant No. 1R13RR023192-01A1 (Jun 2007 -- May 2008). Award Amount: $31,259.
PI/PD (Sep 2003 -- Aug 2007) "ITR: Efficient Calculation of Molecular Surfaces", research supported by National Science Foundation, Grant No. EF-0312612. Award Amount: $147,414.
PI/PD (Feb 2002 -- May 2007) "Accessible Retired Computers in Biology (ARCiB)" project, supported by the National Science Foundation, Grants No. DBI-0203064 and DBI-0315281. Award Amount: $189,735.
PI/PD (Aug 2004 -- July 2006) "New and Upgraded CIF Software", research and software development supported by the International Union of Crystallography. Award Amount: $30,593.
Co-PI with S. Monteferrante (PI) and F. Rispoli (Co-PI) (Sep 2004 -- Jul 2008 )
"Computer Science
PI/PD (Aug 2007 -- October 2010) "New and Upgraded CIF Software", research and software development
supported by the International Union of Crystallography. Award Amount: $41,409.
PI/PD (Sep 2003 -- Aug 2011)
"Local System Support for PDB Biological Unit Search and Display",
research supported by the Office of Science (BER), U.S. Department
of Energy, Grant No. DE-FG02-03ER63601 with supplement in 2005 for
"WPDB: Wide Protein Data Bank Format" and supplement in 2007 for
"New Software Capabilities Relating to the Management of Image Data"
and renewal in 2009. Total Award Amount: $101,527 and
custody of $450,000 of government-owned computer equipment.
At Dowling College, Oakdale, NY
Jan 2011, 2-week short course Programming for Structural Biology at Rochester Institute of Technology,
Also taught undergraduate computer science at St. Joseph's College and at Stony Brook, and
graduate computer science at New York University.
Research Professor (Jan 2015 -- Dec 2015), Professor of Mathematics and Computer Science (Jan 2002 -- Jan 2015) (title changed from
Professor of Computer Science to Professor of Mathematics and Computer Science in 2011), Special
Research Associate in Computer Science (Oct 2001 -- Jan 2002),
Dowling College, Oakdale, NY 11769 and Shirley, NY 11967.
Research Professor (September 2001 -- December 2001), Computer Science
Department, State University of New York at Stony Brook, Stony Brook, NY
11794.
Associate Professor (September 1999 -- June 2000), Department
of Mathematics and Computer Science, St. Joseph's College, 155
West Roe Boulevard, Patchogue, NY 11772-2603.
Senior Computer Analyst, (February 1994 -- October 1997), Chemistry Department,
(September 1993 -- January 1994), Department of Applied Science,
Research Collaborator (September 1983 -- August 1993), Department of Applied Science and Chemistry Department,
Brookhaven National Laboratory, Upton, L.I., New York 11973.
Collaborated on data acquisition software for the Laser Electron
Accelerator Facility (LEAF) in the Chemistry Department and on
data management issues for new x-ray detectors of macromolecular
crystallography at National Synchrotron Light Source-II.
Provided consultation in matters related to computers and mathematics,
laboratory automation, experiment design, networking, assisted
in design of mass-spec system for radical-radical kinetics, FTIR,
real-time reactor stack monitoring system, and airborne data
acquisition system.
Senior Research Scientist (September 1983 -- August 1991),
Courant Institute of Mathematical Sciences, New York University,
251 Mercer Street, New York, New York 10012. Research activities
included mapping of large flat texts to Hypermedia. Director of Administrative Computing (February 1989 -- January
1990), New York University. Managed University Computer Center
(with staff of 120) and provided advice to the University on
matters concerning administrative computing. Administrator for
Computing Projects and Technology Evaluation and Assessment (August
1985 -- August 1989), Academic Computing Facility, CIMS/NYU. Assistant
Director for Experimental Facilities (January 1984 -- July 1985),
Assistant Director for Systems Software Robotics Research Activity (September 1983 -- June 1984), Computer Science Division,
CIMS/NYU. Research in robotics, high speed parallel processing
and numerical linear algebra. Administrative support for various
computing projects at New York University, including representing
NYU in consortia for supercomputing and data communications.
Evaluate and assess computer related technology. Co-principal
investigator (with J.T. Schwartz) and organizer of NSF funded
Symposium on Factory Automation and Robotics, 9-11 September
1985, CIMS/NYU.
Adjunct Professor (September 1987 -- August 1991), Adjunct
Associate Professor (September 1982 -- August 1987), Computer
Science Department, Graduate School of Arts and Science, Courant
Institute of Mathematical Sciences, New York University. Taught Data Communications, Network Design and Implementation,
Biomedical Image Reconstruction, Laboratory Automation, and the
Preparatory Accelerated Course on Data Structures and Assembly
Language.
Trustee, Consortium for Scientific Computing (October
1984 -- August 1991), a New Jersey not-for-profit corporation.
Represented the interests of New York University.
Director, NYSERnet Inc. (New York State Education and
Research Network), (January 1986 -- November 1989), a New York
not-for-profit corporation. Represented the interests of New
York University in the establishment of a high speed data communications network for New York State. Member of the Executive
Committee. Vice-Chairman (December 1987 -- November 1989).
Visiting Member (February 1982 -- August 1983), Courant
Institute of Mathematical Sciences, New York University, 251
Mercer Street, New York, New York 10012. Research on high speed
parallel computation, symbolic manipulation, robotics, and microcomputers.
Scientist (October 1978 -- August 1983), Chemistry Department,
Brookhaven National Laboratory, Upton, L.I., NY 11973. Associate
Scientist (January 1974 -- September 1978). Head, Chemistry Department
Computing and Laboratory Automation Service Group. Chairman (January 1981 -- January 1982), BNL Computer
Users Organization. Provided laboratory automation and computation
services for chemists. From 1975 to 1979 was scientific project
officer on NIH-DOE IAG for support of various aspects of the
NIH/EPA Chemical Information System, Operations Manager CIS
(January 1978 -- February 1979). Previously provided user support
and software integration in CRYSNET project.
Senior Computer Science Analyst (November 1971 -- January
1974). Scientific Programmer Analyst II (October 1970 -- November
1971). Applied Mathematics Department, Brookhaven National Laboratory.
Major operating systems design, implementation and maintenance.
Associate Research Scientist (September 1968 -- September
1970), AEC Computing and Applied Mathematics Center, Courant
Institute of Mathematical Sciences, New York University, 251
Mercer Street. Symbolic manipulation, operating systems modifica58
Adjunct Associate Professor of Mathematics (September
1968 -- June 1969), New York University. Taught undergraduate
course in computing for Washington Square College.
Assistant Research Scientist (February 1968 -- August
1968), AEC Computing and Applied Mathematics Center, CIMS, New
York University. Symbolic manipulation.
Lecturer (February 1968 -- May 1968), part-time, Washington
Square College of Arts and Science, Evening Division, New York
University. Taught course in assembly language.
Operations Assistant (September 1967 -- January 1968),
part-time, AEC Computing and Applied Mathematics Center, CIMS,
New York University. Symbolic Manipulation.
H. J. Bernstein, L. C. Andrews, J. A. Diaz Jr., J. Jakoncic, T. Nguyen, N. K. Sauter, A. S. Soares, J. Y. Wei, M. R. Wlodek, and M. A. Xerri, 2020. "Best practices for high data-rate macromolecular crystallography (HDRMX)", Structural Dynamics 7:1 014302.
L. C. Andrews, H. J. Bernstein, N. K. Sauter, 2020. "Converting three-space matrices to equivalent six-space matrices for Delone scalars in S6", Acta Cryst. A76:1 79 -- 83.
A. Ringer McDonald, H. J. Bernstein, S. C. Daubner, A. L. Goodman, S. M. Irby, J. R. Koeppe, J. L. Mills, S. F. O'Handley, M. Pikaart, R. Roberts, A. Sikora, P. A. Craig, 2019. "BASIL Biochemistry Curriculum,"
L.C. Andrews, H. J. Bernstein, N. K. Sauter, 2019. "A space for lattice representation and clustering", Acta Cryst. A75:3 593 -- 599.
L.C. Andrews, H. J. Bernstein, N. K. Sauter, 2019. ;SPMquot;Selling reduction versus Niggli reduction for crystallographic lattices", Acta Cryst. A75:1 115 -- 120.
P. A. Craig, T. Anderson, H. J. Bernstein, C. Daubner, A. Goodman,
S. M. Irby, J. Koeppe, J. L. Mills, M. Pikaart, A. R. McDonald,
S. O'Handley, R. Roberts, R Stewart, 2018. "Using Protein Function Prediction to Promote Hypothesis-Driven Thinking in Undergraduate Biochemistry Education", The Chemist 91:1 1 -- 8.
H. J. Bernstein, L. C. Andrews, J. Foadi, M. R. Fuchs, J. Jakoncic, S. McSweeney, D. K. Schneider, W, Shi, J. Skinner, A. Soares, Y. Yamada, 2017. "Serial Crystallography with Multi-stage Merging of 1000's of Images". bioRxiv, p.141770.
H, J. Bernstein, B. Andi, K. Badalian, L. E. Berman, D. K. Bhogadi, S. Chodankar, J. DiFabio,
M. R. Fuchs, J. Jakoncic, E. O. Lazo, S. McSweeney, L. Miller, S. Myers, D. K. Schneider,
B. Seiva Martins, W. Shi, J. Skinner, H. Slepicka, A. S. Soares, V. Stojanoff,
R. M. Sweet, R. Tappero, 2016. "Computing Infrastructure, Software Optimization, and Real Time Analysis for
High Data-Rate MX", In Scientific Data Summit (NYSDS) 2016, New York pp. 1 -- 4. IEEE.
H. J. Bernstein, L. C. Andrews. 2016. "Accelerating k-nearest-neighbor searches",
J Appl. Cryst. 49:5 1471 -- 1477.
, a data structure and a software toolkit for
the nearest-neighbor problem", J Appl. Cryst. 49:3 756 -- 761.
https://doi.org/10.1107/S1600576716004039eCollection 2016 Jun 1. PubMed PMID: 27275134; PubMed Central PMCID: PMC4886977.
ulis, J. R. Hester, B. McMahon, N. Spadaccini, J. D. Westbrook and S. P. Westrip, 2016. Specification of the Crystallographic Information File format, version 2.0. J. Appl. Cryst. 49:1 277 -- 284.
M. Osipovitch, M. Lambrecht, C. Baker, S. Madha, J. L. Mills, P. A. Craig, H. J. Bernstein, 2015. "Automated protein motif generation in the structure-based protein function prediction tool ProMOL", J. Struct. Funct. Genomics 16:3-4 101 -- 111.
C. C. Grills, J. A. Farrington, B. H. Layne, J. M. Preses, H. J. Bernstein, J. F. Wishart, 2015. "Development of nanosecond time-resolved infrared detection at the LEAF pulse radiolysis facility", Rev. Sci. Instrum. 86:4 044102.
T. McKay, K. Hart, A. Horn, H. Kessler, G. Dodge, K. Bardhi, K. Bardhi, J. L. Mills, H. J. Bernstein, P. A. Craig, 2015. "Annotation of proteins of unknown function: initial enzyme results", J. Struct. Funct. Genomics 16:1 43 -- 54.
H. J. Bernstein, J. M. Sloan, G. Winter, T. S. Richter, NeXus International Advisory Committee,
Committee on the Maintenance of the CIF Standard, 2014.
"Coping with BIG DATA image formats: integration of CBF, NeXus and HDF5",
Computational Crystallography Newsletter 5 12 -- 18.
A. S. Brewster, J. Hattne, J. M. Parkhurst, D. G. Waterman, H. J. Bernstein, G. Winter, N. K. Sauter, 2014.
"XFEL Detectors and ImageCIF", Computational Crystallography Newsletter 5, 19 -- 24.
B. Hanson, C. Westin, M. Rosa, A. Grier, M. Osipovitch, M. L. MacDonald, G. Dodge, P. M. Boli, C. W. Corwin, H. Kessler, T. McKay, H. J. Bernstein, P. A. Craig, 2014. "Estimation of protein function using template-based alignment of enzyme active sites", BMC Bioinformatics 15:87 1 -- 10.
K. J. McGill, M. Asadi, M. T. Karakasheva, L. C. Andrews, H. J. Bernstein, 2014. "The geometry of Niggli reduction: SAUC -- search of alternative unit cells", J. Appl. Cryst. 47:1 360 -- 364
L. C. Andrews, H. J. Bernstein, 2014. "The geometry of Niggli reduction: BGAOL -- Embedding Niggli reduction and analysis of boundaries" J. Appl. Cryst. 47:1 346 -- 359.
L. C. Andrews, H. J. Bernstein, 2013. "The Geometry of Niggli Reduction II: BGAOL -- Embedding Niggli Reduction" Arxiv preprint arXiv: 1305.6561.
K. J. McGill, M. Asadi, M. T. Karakasheva, L. C. Andrews, H. J. Bernstein, 2013. "The Geometry of Niggli Reduction III: SAUC -- Search of Alternate Unit Cells" Arxiv preprint arXiv: 1307.1811.
L. C. Andrews, H. J. Bernstein, 2012.
"The Geometry of Niggli Reduction"
Arxiv preprint arXiv:1203.5146.
S. E. Mottarella, M. Rosa, A. Bangura, H. J. Bernstein, P. A. Craig, 2010.
"ConSCRIPT: A RasMol to PyMOL Script Converter," Biochem. Mol. Biol. Edu. 38:6 419 -- 422.
H. J. Bernstein, P. A. Craig, 2010. "Efficient molecular surface rendering by linear-time pseudo-Gaussian approximation to Lee-Richards surfaces (PGALRS)," J. Appl. Cryst.
43:2 356 -- 361.
M. T. Dougherty, M. J. Folk, E. Zadok, H. J Bernstein, F. C. Bernstein, K. W. Eliceiri, W. Benger, C. Best, 2009.
"Unifying biological image formats with HDF5," CACM 52:10 42 -- 47.
H. J. Bernstein, 2009. "Review: important to prevent a return to abuses of the past", Nature 458:7237 404.
G. Todorov, H. J. Bernstein, 2008. "VCIF2: extended CIF validation software"
J. Appl. Cryst. 41:4 808 -- 810.
H. J. Bernstein, 2000. "Recent changes to RasMol,
recombining the variants", Trends Biochem. Sci. 25:9 453 -- 455.
H. J. Bernstein, 1999. Supplement to "Computer Programming
Languages", Encyclopedia of Applied Physics, Update I, VCH Publishers,
Inc., 355 -- 359.
C. Fockenberg, H. J. Bernstein, G. E. Hall, J. T. Muckerman,
J. M. Preses, T. J. Sears, R. E. Weston, Jr., 1999. "Repetitively
sampled time-of-flight mass spectrometry for gas-phase kinetics
studies", Rev. Sci. Instrum. 70:8 3259 -- 3264.
H. J. Bernstein, F. C. Bernstein and P. E. Bourne, 1998. "CIF
Applications. VIII. pdb2cif: Translating PDB Entries into mmCIF
Format", J. Appl. Cryst. 31:2 282 -- 295.
H. J. Bernstein and S. R. Hall, 1998. "CIF Applications.
VII.
Extending the Validation of CIF Data Names", J. Appl.
Cryst. 31:2 278 -- 281.
H. J. Bernstein 1997 "Software Engineering", Encyclopedia
of Applied Physics, Vol. 18, VCH Publishers, Inc.,
305 -- 340.
S. R. Hall and H. J. Bernstein, 1996. "CIF Applications.
V.
Extended Tool Box for Manipulating CIFs", J. Appl. Cryst.
29:5 598 -- 603.
L. C. Andrews and H. J. Bernstein, 1995. "Bravais Lattice
Invariants", Acta Cryst. A51:3 413 -- 416.
J. M. Preses, G. E. Hall, J. T. Muckerman, T. J. Sears,
R. E. Weston, C. Guyot, J. C. Hanson, G. W. Flynn and H. J. Bernstein, 1993.
"A Fourier-Transform Spectrophotometer for Time-Resolved Emission
Measurements using a 100-Point Transient Digitizer", Rev. Sci. Instrum. 64:1 95 -- 102.
H. J. Bernstein, 1992. "Computer Programming Languages", Encyclopedia
of Applied Physics, Vol. 4, VCH Publishers, Inc., 163 -- 188.
H. J. Bernstein, J. Tichler, R. M. Brown, 1988. "How to Tell
Which Way the Wind is Blowing", BNL Informal Report, BNL-41548,
Department of Applied Science, Brookhaven National Laboratory,
Upton, New York, July 1988, 34 pages.
H. J. Bernstein, 1988. "Some Comments on Highly Dynamic Network
Routing", Technical Report No. 371, Computer Science Department,
New York University, May 1988, 11 pages.
L. C. Andrews and H. J. Bernstein, 1988. "Lattices and Reduced
Cells as Points in 6-Space and Selection of Bravais Lattice Type
by Projections", Acta Cryst. A44, 1009 -- 1018.
H. J. Bernstein, M. Goldstein, 1988. "Optimizing Givens'
Algorithm for Multiprocessors", SIAM J. Sci.
Stat. Comput. 9:3 601 -- 602.
H. J. Bernstein, 1987. "An Inequality for Self-Adjoint Operators
on a Hilbert Space", Proc. AMS 100:2
319 -- 321. (Corrigenda in proceedings of the AMS 101:2
1987 394.)
H. J. Bernstein, 1986. guest editor, "Special Section on
Factory Automation and Robotics", Commun. ACM,
29:6 484 -- 522.
H. J. Bernstein, M. Goldstein, 1986. "Parallel Implementation
of Bisection for the Calculation of Eigenvalues of Tridiagonal
Symmetric Matrices", Computing 37:1 85 -- 91.
H. J. Bernstein, 1985. "Constraints in Real Time Data Acquisition
and Control", presented Symposium on Factory Automation
and Robotics, 9 -- 11 September 1985, CIMS/NYU, and as a keynote
address at Automation-86, 10 -- 12 March 1986, Houston Texas.73
Technical Report No. 195, Robotics Research Report No.
59, New York University Dept. of Computer Science, December 1985.
H. J. Bernstein, 1984. "Determining the Shape of a Convex
n-sided Polygon by using
2n+k Tactile Probes", New York University,
Courant Institute of Mathematical Sciences, Technical Report
No. 120, Robotics Report No. 29, June 1984, 13 pages,
Information Processing Letters 22:5, April 1986, 255 -- 260.
H. J. Bernstein, P. G. Lowney
H. J. Bernstein, 1984. "An Accelerated Bisection Method for
the Determination of the Eigenvalues of a Symmetric Tridiagonal
Matrix", Numer. Math. 43:1 153 -- 160.
H. J. Bernstein, M. Goldstein, 1984. "G22.3023 -- Special
Topics of Industrial Interest -- Network Design and Implementation",
Lecture Notes, Spring Semester, 160 pages.
H. J. Bernstein, M. Goldstein, 1983. "G22.2262 -- Data Communications",
Lecture Notes, Fall Semester 1983, Computer Science Department,
Courant Institute of Mathematical Sciences, 160 pages.
H. J. Bernstein, 1983. "Enabling CTS Handshaking on the Intel
8251A USART in Asynchronous Polled Mode", Brookhaven National
Laboratory Informal Report, BNL 33617, September 1983, 18 pages.
H. J. Bernstein, T. S. Clifford, H. R. Connell, W. A.
Love, M. H. McKeown, T. C. Nepsee, J. A. Niederer, C. Rebbi,
D. R. Stampf, J. L. Tichler, 1983. "Interactive Computing Facilities
for BNL, Report of a CPC Subcommittee", Brookhaven National
Laboratory Informal Report, BNL 33342, March 1983, 14 pages.
J. Logan, H. J. Bernstein, 1983. "A Monte Carlo Simulation
of Compton Scattering in Positron Emission Tomography", J. Comput.
Assist. Tomography 7:2 316 -- 320.
H. J. Bernstein, M. Goldstein, 1982. "RINSE -- What follows
WASHCLOTH", Ultracomputer Note #47, Computer Science Department,
New York University, 16 pages.
L. C. Andrews, H. J. Bernstein, G. A. Pelletier, 1980. "A
Perturbation Stable Cell Comparison Technique", Acta Cryst.
A36:2 248 -- 252.
L. C. Andrews, H. J. Bernstein, 1979. "The NIH-EPA Chemical
Information System", ONLINE 2:1 35 -- 49.
L. C. Andrews, H. J. Bernstein, 1976. "The Squared Power
Method to Fit a Plane to a Set of Points", Acta Cryst.
A32:3 504 -- 506.
H. J. Bernstein, 1976. "What to do with that Obsolete Computer
Center You're Running", Datamation 22:11 197 -- 198.
T. F. Koetzle, L. C. Andrews, F. C. Bernstein, H. J.
Bernstein, 1975. "CRYSNET: A Network for Crystallographic Computing",
ACS Sym. Ser. 19 1 -- 8.
H. J. Bernstein, S. Heller, 1974. "Dynamic Sharing of Disk Space",
Applied Mathematics Department, Brookhaven National
Laboratory, Document BNL 19398, AMD 684, October 1974.
H. J. Bernstein, L. C. Andrews, H. M. Berman, F. C.
Bernstein, G. H. Campbell, H. L. Carrell, H. B. Chiang, W. C.
Hamilton, D. D. Jones, D. Klunk, T. F. Koetzle, E. F. Meyer Jr. .,
C. N. Morimoto, S. Sevian, R. K. Stodola, M. M. Strongson, T.
V. Willoughby, 1974. "CRYSNET --- A Network of Intelligent Remote
Graphics Terminals", Second Annual AEC Scientific Computer Information
Exchange Meeting, Proceedings of the Technical Program,
149 -- 161. Brookhaven National Laboratory Report #18803.
H. J. Bernstein, 1973. "Report on Magnetic Tapes and Tape
Drives", Applied Mathematics Department, Brookhaven National
Laboratory, Document 11.4.1, AMD 657, 31 pages.
H. J. Bernstein (as Anon.), 1973. "Management Tips from a
Programmer", Datamation 19:6 204 -- 206.
H. J. Bernstein, 1972. "Compiling Fixed-Point Multiplications",
Comm. ACM 15:8 772.
N. V. Findler, J. L. Pfaltz, H. J. Bernstein, 1972. "Four
High Level Extensions of FORTRAN IV", Spartan Books, New York, 391 pages.
H. J. Bernstein, 1970. "317000 Prime Numbers", New York
University, March 1970, single copy publication for Courant Institute
Library, NYU.
H. J. Bernstein, 1970. "The Algebraic Manipulation Package, SYMBOLANG, A
Manual for Users", AEC Research and Development Report, Mathematics
and Computing, NYO-1480-152, February, 167 pages.
H. J. Bernstein, 1970. "Ludeman's PL/I FORMAC Problem as
Handled by SYMBOLANG", SIGSAM Bulletin 14 19 -- 35.
H. J. Bernstein, 1969. "Stimulus-Response", Analog Science
Fiction/Science Fact, September, 92 -- 111.
H. J. Bernstein, 1969. "CCN-Groups of Order Divisible by
Three Primes", Proc. AMS 22:1 202 -- 205.
H. J. Bernstein, 1968. "Extension of Hajòs'
Factorization Theorem to some Non-Abelian Groups", (doctoral
thesis), Comm. Pure and Applied Math. 21:4 289 -- 311.
H. J. Bernstein, 1968. "Phantasmaplasmagoria", Analog Science
Fiction/Science Fact, April, 57 -- 66.
H. J. Bernstein, O. Moller, E. S. Rapaport, 1966. "Machine
Factorization of Groups", Mathematical Algorithms I:3 39 -- 51
D. Bernstein, H. J. Bernstein, 1966. "The Twisted Nose and
the Submental Film", Eye, Ear, Nose and Throat Monthly 45:10 92 -- 100.
D. Bernstein, H. J. Bernstein, 1965. "Axial Submental Nasal
Film", Archives of Otolaryngology 82:4 430 -- 432.
H. J. Bernstein, 2019. "Extending NXmx Metadata to Facilitate Data Sharing;
The `Gold Standard',"Poster,
32nd
European Crystallographic Meeting, ECM32, Vienna Austria, 18 -- 23 August 2019.
H. J. Bernstein, 2019. "Better SAUC -- Improving the Identification of Nearby Cells," Poster,
32nd
European Crystallographic Meeting, ECM32, Vienna Austria, 18 -- 23 August 2019.
H. J. Bernstein, L. C. Andrews, J. A. Diaz Jr., J. Jakoncic, T. Nguyen, N. K. Sauter,
A. S. Soares, J. Y. Wei, M. R. Wlodek, M. A. Xerri, 2019. "Best practices for high data-rate
macromolecular crystallography (HDRMX)," American Crystallographic Association, Transactions Symposium, ACA 2019, Covington, KY, 20 -- 24 July 2019.
H. J. Bernstein, L. C. Andrews, 2017. "From Metric Properties to Unit-Cell Databases and Clusters," International Union of Crystallography, MS017, XXIV IUCr Congress, Hyderabad, India, August 2017, MS017.P07, Hyderabad, Andhra Pradesh, India (August 21, 2017)
Acta Cryst. A73 C1446.
R. M. Sweet, B.Andi, L. E. Berman, H. J. Bernstein; D. K. Bhogadi, S. Chodankar,M. R. Fuchs, Y. Gao, V. Graziano, N. Guichard, J Jakoncic, E. O. Lazo, S. McSweeney, L. Miller, S. Myers, D. K. Schneider, A. S. Soares, B. S. Martins, W. Shi, J. Skinner, V. Stojanoff, R. Tappero, Y. Yamada, L. Yang, 2017. "Synchrotron Biosciences at National Synchrotron Light Source II: A Biomedical Technology Research Resource," American Crystallographic Association, ACA 2017, Poster 27-M, New Orleans, Louisiana, United States (May 2017) Acta Cryst. A73 a251.
H. J. Bernstein, 2017. "Software for Processing High-Data-Rate MX in CIF and NeXus/HDF5," IUCr, MS107, XXIV IUCr Congress, 6, Hyderabad, Andhra Pradesh, India (August 21, 2017)
Acta Cryst. A73 C1363, 2017.
https://scripts.iucr.org/cgi-bin/paper?S2053273317082122
H. J. Bernstein, L. C. Andrews, K. Badalian, A. Soares, W. Shi, J. Jakoncic, Martin R. Fuchs, 2017. "Synchrotron Serial Crystallography with Multi-stage Merging of 1000's of Images," American Crystallographic Association, Session 2.1.2 Joint Methods for High Rate Data Processing: XFEL and Synchrotron, ACA 2017, New Orleans, Louisiana, USA, 03, New Orleans, Louisiana, United States (May 2017) Acta Cryst. A73 a156.
H. J. Bernstein, 2017. "What Every Experimentalist Needs to Know About Recording Essential Metadata of Primary (i.e. Raw) Diffraction Data," American Crystallographic Association, Research Data Management", ACA 2017, WK.04-II Research Data Management (sub-session), New Orleans, Louisiana, United States (May 2017) Acta Cryst. A73 a189.
J. L. Mills, A. DiCola, R. Roberts, M. Pikaart, C. Daubner, S. Irby, T. Anderson, H. J. Bernstein, P. A. Craig, 2017. "Assessing Learning Gains Through ePortfolios in an Undergraduate Biochemistry Lab," American Society of Biochemistry and Molecular Biology, 2017 Annual Meeting, 588.13, San Diego, CA, United States (April 21, 2017) The FASEB Journal, 31(1 Supplement), 588.13.
https://www.fasebj.org/doi/abs/10.1096/fasebj.31.1_supplement.588.13
H. J. Bernstein, editor, 2016. "NXmx application definitions, Revision 1.5" and "NXtransformations, Revision 1.1",
as presented to the NeXus International Advisory Committee (NIAC) at the NIAC meeting, Copenhagen Denmark, October 13 -- 14,
2016.
H. J. Bernstein, editor, 2016. "High Data-Rate Macromolecular Crystallography Meeting", ECM-30 2 September 2016.
H. J. Bernstein, K. Badalian, J. Jakoncic, E. Lazo, S. McSweeney, W. Shi, R. M. Sweet, 2016. "Computing Infrastructure, Software Optimization for High Data-Rate MX, and Real-Time Analysis", poster MS3-P1, 30th Meeting of the European
Crystallographic Association 28 August -- 1 September 2016, Congress Center Basel, Switzerland.
H. J. Bernstein, editor, 2016. "Report of the High Data-Rate Macromolecular Crystallography Meeting", ACA 2016 23 July 2016.
L. C. Andrews, H. J. Bernstein, 2016. "A Seven-Space Representation of Lattices Based on Sorted Delaunay Reduction", poster 73-MO, American Crystallography Association, Denver, CO, July 22 -- 26 2016.
H. J. Bernstein, K. Badalian, J. Jakoncic, E. Lazo, S. McSweeney, W. Shi, A. Soares, R. M. Sweet, 2016. "Computing Infrastructure, Software Optimization for High Data Rate MX, and Real Time Analysis", 01.05.02.05 American Crystallography Association, Denver, CO, July 22 -- 26 2016.
K. Badalian, H. J. Bernstein, 2016. "New Compression Algorithms for Macromolecular Crystallographic Diffraction Images II" poster 71-SA, American Crystallography Association, Denver, CO, July 22 -- 26 2016.
H. J. Bernstein, editor, 2016 "Report of the High Data-Rate Macromolecular Crystallography Meeting", Brookhaven National Laboratory 26 -- 28 May 2016.
C. D. Baker, J. L. Mills, H J. Bernstein, P. A. Craig, 2016. "Database for Storage and Rapid Retrieval of ProMOL Results", FASEB J. April 2016 30:601.1. American Society of Biochemistry and Molecular Biology, 2016 Annual Meeting, San Diego, CA, April 2 -- 6.
S. Madha, M. Lambrecht, J. L. Mills, H. J. Bernstein, P. A. Craig, 2016. "Refinement of the ProMOL Algorithm and
Determination of Function Based on Homology", FASEB J. April 2016; 30:1077.1. American Society for Biochemistry and Molecular Biology, 2016 Annual Meeting, San Diego, CA, USA April 2 -- 6.
J. L. Mills, K. Hart, E. Thurnherr, S. F. O'Handley, H. J. Bernstein, P. A. Craig, 2016. "A Redesigned Undergraduate Biochemistry Lab", FASEB J. April 2016; 30:880.8. American Society for Biochemistry and Molecular Biology, 2016 Annual Meeting, San Diego, CA, USA April 2 -- 6.
H. J. Bernstein, 2015. "Common diffraction image metadata specification in imgCIF, HDF5 and NeXus", Workshop on Metadata for raw data from X-ray diffraction and other structural techniques, A Satellite Workshop to the 29th European Crystallographic Meeting,
Organised by DDDWG (the IUCr Diffraction Data Deposition Working Group) and the
Croatian Association of Crystallographers, Rovinj, Croatia, 22 -- 23 August 2015.
L. Rosa, P. Craig P, H. Bernstein, 2015. "In silico studies of the function of crystal structure
of a porin-like protein
(BACUNI_01323) from Bacteroides uniformis ATCC 8492 at 2.32 A resolution", American Crystallographic Association, Philadelphia, PA, July 2015.
K. Hart, T. McKay, J. L. Mills, H. J. Bernstein, P. Craig, 2015. "In Silico and In Vitro Characterization of Proteins of Unknown Function", FASEB J. April 2015; 29:722.5, Invited Talk, American Society of Biochemistry and Molecular Biology, Boston, MA, March 2015.
https://www.fasebj.org/doi/10.1096/fasebj.29.1_supplement.722.5
M. Albalwi, H. Bernstein, P. Craig, 2015. "Using ProMol to Study Zinc Finger Motifs", FASEB J. April 2015; 29:567.20, American Society for Biochemistry and Molecular Biology, Boston, MA, March 2015.
S. Madha, V. A. Kovuri, M. Bryan, P. Craig, H. Bernstein, 2015. "The Inclusion of Pfam Designations to ProMOL", FASEB J. April 2015; 29:567.8,American Society of Biochemistry and Molecular Biology, Boston, MA, March 2015.
https://www.fasebj.org/doi/10.1096/fasebj.29.1_supplement.567.8
V. A. Kovuri, M. Bryan, P. Craig, H. Bernstein, 2015. "Improving function assignment for metalloproteins through active site alignment using ProMOL/PyMOL", FASEB J. April 2015; 29:567.11, American Society of Biochemistry and Molecular Biology, Boston, MA, March 2015.
protein function prediction using ProMOL", FASEB J. April 2015; 29:567.12, American Society of Biochemistry and Molecular Biology, Boston, MA, March 2015.
K. Bardhi, K. Bardhi, P. Craig, H. Bernstein, 2015. "Targeting the AKT pathway in glioma by using bioinformatics tools",
FASEB J. April 2015; 29:721.22, American Society of Biochemistry and Molecular Biology, Boston, MA, March 2015.
H. J. Bernstein, J. M. Sloan, G. Winter, T. S. Richter, NeXus International Advisory Committee,
Committee on the Maintenance of the CIF Standard, 2014.
"Coping with BIG DATA image formats: integration of CBF, NeXus and HDF5, A Progress Report ", poster, American Crystallographic Association, 2014 Annual Meeting, Albuquerque, NM, May 24 -- 28, 2014.
T. McKay, K. Hart, H. Bernstein, W. Tedla-Boyd, P. Craig, 2014. "Protein Function Prediction Using ProMOL and PyMOL",FASEB J. April 2014; 28:777.3, American Society for Biochemistry and Molecular Biology, 2014 Annual Meeting, ASBMB, San Diego, CA, April 26 -- 30, 2014.
K. Hart, A. Horn, G. Dodge, H. Bernstein, P. Craig, 2014. "The Biochemical Characterization of the PDB Entry 4EZI by In Silico and In Vitro Quantitative Techniques", FASEB J. April 2014; 28:777.2, American Society for Biochemistry and Molecular Biology, 2014 Annual Meeting, ASBMB, San Diego, CA, April 26 -- 30, 2014.
V. A. Kovuri, P. A. Craig, H. J. Bernstein, 2014. "Recognition of Metal Ions Using ProMOL to Improve Protein Function Assignation", FASEB J. April 2014; 28:777.1, American Society for Biochemistry and Molecular Biology, 2014 Annual Meeting, ASBMB, San Diego, CA, April 26 -- 30, 2014.
P. A. Craig, Greg Dodge, H. Bernstein, 2014. "Role of Undergraduate Biochemistry Education in Protein Function Assignment", FASEB J. April 2014; 28:618.26, American Society for Biochemistry and Molecular Biology, 2014 Annual Meeting, ASBMB, San Diego, CA, April 26 -- 30, 2014.
H. J. Bernstein, 2013. "Managing crystallographic data in facilities using integrated CIF, HDF5 and NeXus" talk at "Crystallographic Information and Data Management"
A Satellite Symposium to the 28th European Crystallographic Meeting, U. of Warwick, Coventry, England, 25 August 2013.
G. Dodge, E. N. Arroyo, H. Bernstein, P. Craig, 2013. "Development and Testing of a Systematic Approach for Computational Enzyme Function Determination" FASEB J. April 2013 28:811.1, American Society for Biochemistry and Molecular Biology, 2013 Annual Meeting, Boston, MA, April 20 -- 24, 2013.
M. Osipovitch, H. J. Bernstein, P. A. Craig, 2013. "Automated Generation of Motif Templates in Protein Function Prediction Software ProMOL", FASEB J. April 2013 28:812.2,
American Society for Biochemistry and Molecular Biology, 2013 Annual Meeting, Boston, MA, April 20 -- 24, 2013.
H. J. Bernstein, 2012. "NSLS-II Data Management Plan", talk at Partnering Data Collection and Reduction in the Beamline Environment workshop,
July 27, 2012, Harvard Medical School, Boston, MA.
G. J. Dodge, C. Corwin, H. J. Bernstein, P. A. Craig, 2012. "Improving a software system for protein active site determination," FASEB J. April 2012 26:978.7, poster, American Society for Biochemistry and Molecular Biology, 2012 Annual Meeting, San Diego, CA, April 21 -- 25, 2012.
H. J. Bernstein, L. C. Andrews, 2011. "Using Lee-Richards Surfaces to Calculate Close Contacts
and Complex Interfaces," poster MS09.P03, XXII Congress of the International Union of Crystallography,
22 -- 30 August 2011, Madrid, Spain, (see abstract in Acta Cryst. A67 (on-line supplement), p C269).
G. J. Dodge, D. P. Bobo, H. J. Bernstein, 2011. "Using Catalytic Site Motif Alignment to Assign Function", FASEB J. April 2011 25:724.3,
American Society for Biochemistry and Molecular Biology, 2011 Annual Meeting, Washington, DC, April 9 -- 13, 2011.
https://www.fasebj.org/doi/10.1096/fasebj.25.1_supplement.724.3
E. Zlateva, H. J. Bernstein, 2010. "Local caching to improve efficiency of CIF DDLm function import references in
SBEVSL," poster S-179, ACA 2010, American Crystallographic Association meeting, 24 -- 29 July 2010, Chicago, IL.
M. Rosa, H. Bernstein, P. Craig, 2010. "Enhancements in Motif Preparation and Identification in ProMOL,"
poster M-099, ACA 2010, American Crystallographic Association meeting, 24 -- 29 July 2010, Chicago, IL.
L. C. Andrews, H. J. Bernstein, 2010. "A Pair-Based Approach to Structural Homology Using
Quaternion SLERP Averaging and Local Rotations," poster T-100, ACA 2010, American Crystallographic Association meeting, 24 -- 29 July 2010, Chicago, IL.
H. J. Bernstein, 2010. "imgCIF, HDF5, NeXus: Issues in Integration of Images from Multiple Sources" at "HDF5 as hyperspectral data analysis format"
Workshop,11 -- 13 January 2010, ESRF, Grenoble, France.
L. Doucette, D. Matthews, P. A. Craig, H. J. Bernstein, 2009. "Optimizing Speed and Accuracy in Visualization of Proteins".
poster (abstract 17), Rochester Institute of Technology
M. Rosa, P. A. Craig, H. J. Bernstein, 2009. "Lee-Richards Approximation by Intra-Residue Reentrant Surface Exclusion," talk (abstract
118), Rochester Institute of Technology
H. J. Bernstein, 2008. "Transition to object-oriented data representations: Interconversion between CIF and other formats," invited talk MS.96.3, XXI Congress of the International Union of Crystallography,
23 -- 31 August 2008, Osaka, Japan, (see abstract in Acta Cryst. A64 (on-line supplement), page C160).
H. J. Bernstein, G. Darakev, N. Darakev, J. Jemilawon, G. McQuillan, G. Todorov, P. A. Craig, S. E. Mottarella, C. Wischmeyer, 2008. "A simplified unified approach for animations and movies using SBEVSL,"
poster P01.02.81, XXI Congress of the International Union of Crystallography,
23 -- 31 August 2008, Osaka, Japan, (see abstract in Acta Cryst. A64 (on-line supplement), page C195).
H. J. Bernstein, I. Awuah Asiamah, G. Darakev,
N. Darakev, J. Jemilawon, N. Jia, P. Kamburov, G. McQuillan, G. Todorov, 2008.
"SAXS, Lee-Richards surfaces and a simplified command set for maps,"
poster MP039 (abstract W0070), ACA 2008, American Crystallographic Association Meeting, 31 May -- 5 June 2008, Knoxville, TN.
P. A. Craig, S. E. Mottarella, C. Wischmeyer, H. J.
Bernstein, I. Awuah Asiamah, D.
Boycheva, G. Darakev, N. Darakev, P. Gozo, J. Jemilawon, 2008. "Using RasMol, PyMol and Jmol with
the Structural Biology Extensible
Visualization Scripting Langauge
(SBEVSL)," poster MP054 (abstract W0073), ACA 2008, American Crystallographic Association Meeting, 31 May -- 5 June 2008, Knoxville, TN.
S. Mottarella, B. Hanson, C. Westin, P. Craig, H. Bernstein, 2008. "A Rasmol to PyMOL Translator,"
poster TP161 (abstract W0049), ACA 2008, American Crystallographic Association Meeting, 31 May -- 5 June 2008, Knoxville, TN.
H. J. Bernstein, 2008. "Progress in adoption of imgCIF and integration with NeXus," presentation at
imgCIF workshop, Brookhaven National Laboratory, 22 May 2008.
S. Mottarella, C. Wischmeyer, B. Hanson, C. Westin, H. Bernstein, P. A. Craig, 2008. "Executing RasMol Scripts in PyMOL," FASEB J. April 2008; 22:659.1, American Society for Biochemistry and Molecular Biology, 2008 Annual Meeting, ASBMB, San Diego, CA, April 5 -- 8, 2008.
H. J. Bernstein, 2008. "Routing Students in Computer Science",
presentation for
"Preparing the Computing Workforce;
the Interface Between K-12 and College"
panel at CCSCE 2007 meeting of the Consortium for Computing Sciences in Colleges -- Eastern Region, 12 -- 13 October 2007,
St. Joseph's College, Patchogue, NY,
with panel abstract in
H. J. Bernstein, 2007. "ImgCIF and the Interaction with NeXus", workshop presentation at imgCIF Workshop,
17 August 2007, Diamond Light Source, Chilton, England, organized in conjunction with BSR 2007.
H. J. Bernstein, 2007. "imgCIF Progress, A Report to the Community", poster
at poster session B, 9th International Conference on Biology and Synchrotron Radiation
(BSR 2007), 13-17 August 2007, Manchester, England. Supplemented by oral presentation
in imgCIF workshop, 14 August 2007 at BSR 2007, Manchester, England.
J. Jemilawon, I. Awuah Asiamah, H. J. Bernstein, G. Darakev,
N. Darakev, P. Kamburov, 2007. "Use of CBFlib for Map Support", poster, poster session B, 9th International Conference on Biology and Synchrotron Radiation
(BSR 2007), 13-17 August 2007, Manchester, England.
G. Darakev, H. J. Bernstein, 2007. "Achieving portability for synchrotron images using
NeXus and XML", poster, poster session B, 9th International Conference on Biology and Synchrotron Radiation
(BSR 2007), 13-17 August 2007, Manchester, England.
H. J. Bernstein, 2007. "CIF, mmCIF, imgCIF and more: Reducing Friction in PX Sychrotron
Image Data Acquisition", workshop presentation, session 2A, "Standards for data format and management," CGW 2007, at Second International CrystalGrid Workshop on Crystallographic Data
Management, 26-28 April 2007, Bloomington, IN.
H. J. Bernstein, 2007. "CIF, mmCIF, imgCIF and more: Reducing Friction in Managing Data in
Structural Biology" given on 12 January 2007, Paul Scherrer Institut, Villigen CH and 17 January 2007, European Synchrotron Radiation Facility, Genoble, France.
H. J. Bernstein, 2007. "Notes on Computer Science Education -- Is it Broken?", panel presentation, session 2A. "Panel: Broken or Not? Fixing Undergraduate Computing Education in
a Multi-Disciplinary World," CCSCE 2007 meeting of the Consortium for Computing Sciences in Colleges -- Northeastern Region, Rochester Institute of Technology, Rochester, NY 20 -- 21 April 2007
R. M. Sweet, H. J. Bernstein, 2007. "imgCIF: The Management of Synchrotron Image Data", workshop
WK.02 (abstract E0025), ACA 2006, American Crystallographic Association Meeting, 22-27 July 2006, Honolulu, HI.
G. Todorov, K. Z. Mitev, H. J. Bernstein, 2006. "Extended CIF Validation Software", poster
S-P083 (abstract W0169), ACA 2006, American Crystallographic Association Meeting, 22-27 July 2006, Honolulu, HI.
G. Darakev, G. Todorov, V. Litchev, K. Z. Mitev, H. J. Bernstein, 2006. "NeXus with Binary XML -- Efficient Support of Binary Data in the XML Implementation of the NeXus File Format", poster
M-P156 (abstract W0165), ACA 2006, American Crystallographic Association Meeting, 22-27 July 2006, Honolulu, HI.
P. N. Zhivkov, H. J. Bernstein, 2004.
"Approximating Short-Range Lee-Richards Molecular Surfaces by Blurring" poster abstract W0037, ACA 2004, American Crystallographic Association Meeting, 17 -- 22 July 2004, Chicago, IL.
H. J. Bernstein, F. C. Bernstein, 2002. "Extension of
RasMol to Display Surfaces, to Handle CML/XML and other new Features"
presentation, XIX Congress and General Assembly of the International
Union of Crystallography, Geneva, Switzerland, August 6 -- 15, 2002 (see abstract in Acta Cryst. A58
(Supplement), C217).
H. J. Bernstein, F. C. Bernstein, 2002. "Yaxdf and the
Interaction between CIF and XML" presentation at XIX Congress
and General Assembly of the International Union of Crystallography,
Geneva, Switzerland, August 6 -- 15, 2002 (see abstract in Acta
Cryst.A58 (Supplement), C217).
H.J. Bernstein, F.C. Bernstein, 2000. "xmlCIF: A Proposal
for Faithful Translation Between XML and Extended CIF", poster (abstract E0009),
ACA 2000, American Crystallographic Association Meeting, St. Paul, MN, 22 -- 27 July 2000.
F. C. Bernstein, H. J. Bernstein, 1999. "Graphical Representation
of Alternate Conformers", poster session, XVIII IUCr Congress
H. J. Bernstein, P. J. Ellis, A. P. Hammersley, A. J.
Howard, J. W. Pflugrath, R. M. Sweet, 1999. "Proposed Crystallographic
Binary File and Image-supporting CIF with API and Dictionary",
poster session, XVIII IUCr Congress
H. J. Bernstein, F. C. Bernstein, 1999. "RasMol Extensions for Alternate Conformers, CIF and mmCIF", Poster PT08, ACA 1999,
American Crystallographic Association Meeting, Buffalo, NY, 22 -- 27 May 1999.
H. J. Bernstein, F. C. Bernstein, 1998. "Recent Developments
in Software Tools for CIF and mmCIF", presentation, ACA 1998, American
Crystallographic Association Meeting, Arlington, VA, 18 -- 23 July
1998.
H. J. Bernstein, F. C. Bernstein, 1997. "Converting Fortran
Applications for use with CIF", invited presentation at mmCIF
Software Developers' Workshop, Rutgers, 17 -- 19 October 1997.
H. J. Bernstein, F. C. Bernstein, 1997. "Portable Software Tools for CIF and mmCIF', presentation at CIF
Software Developers' Workshop, ACA 1998, American
Crystallographic Association Meeting, St. Louis, MO, 19 -- 25 July 1997.
J. Westbrook, D. Argentar, H. M. Berman, H. Bernstein,
F. Bernstein, J. Biggs, P. Bourne, I. D. Brown, S. Bryant, J.
Fait, P. Edgington, P. Fitzgerald, A. Hammersley, P. Keller,
B. McMahon, P. Murray-Rust, O. Ritter, R. Sayle, J. Thornton,
B. Toby, E. Ulrich, K. Watenpaugh, S. Wodak, 1997. "CIF Application
Developers' Workshop", (Abstract E253), ACA 1997, American Crystallographic Association Meeting, St. Louis, MO, 19 -- 25 July 1997. Served with J. Westbrook as co-chair of
the session.
F. C. Bernstein, H. J. Bernstein, 1997. "Data Representation
of Disorder and Alternate Conformations in Macromolecular Structures",
poster (abstract E116), ACA 1997, American Crystallographic Association Meeting, St. Louis, MO, 19 -- 25 July 1997.
F. C. Bernstein, H. J. Bernstein, P. E. Bourne, 1996.
"An Introduction to mmCIF: Conversion between PDB Format and
mmCIF", poster, 24th Aharon Katzir-Katchalsky Conference
on Bioinformatics -- Structure, 17 -- 21 November 1996.
H. J. Bernstein, L. C. Andrews, 1996. "Software for Lattice
Identification in G-6", invited presentation for Seattle IUCr
meeting, 7 -- 17 August 1996.
F. C. Bernstein, H. J. Bernstein, 1996. "Translating mmCIF
Data into PDB Entries", invited presentation for CIF workshop
at Seattle IUCr meeting, 7 -- 17 August 1996.
P. E. Bourne, H. J. Bernstein, F. C. Bernstein, 1996.
"Translating PDB Entries into mmCIF", invited presentation
for CIF workshop at Seattle IUCr meeting, 7 -- 17 August 1996.
H. J. Bernstein, S. R. Hall, 1996. "Reading, Writing and
Validating CIFs using CIFtbx2 AND CYCLOPS", invited presentation
for CIF workshop at Seattle IUCr meeting, 7 -- 17 August 1996.
H. J. Bernstein, F. C. Bernstein, P. E. Bourne, 1996.
"Moving Between mmCIF and PDB Format", poster at BCA Meeting,
Cambridge England, 1 -- 4 April 1996.
A. P. Hull, P. A. Michael, H. J. Bernstein, 1994. "A Real-Time Stack Radioactivity
Monitoring System and Dose Projection Program", a presentation by
A. Hull to the 23rd DOE/NRC Nuclear Air Cleaning and Treatment
Conference, Buffalo, New York
July 25-28, 1994, session 7, 259 -- 268.
L. C. Andrews and H. J. Bernstein, 1993. "Bravais Lattice
Invariants", poster session, ACA 1993, American Crystallographic Association Meeting, Albuquerque, New Mexico,
May 1993.
H. J. Bernstein, 1993. "Brookhaven National Laboratory's
Technical Assistance to the NRC for `Radioactive Materials
Released from Nuclear Power Plants' ", a presentation
to the Nuclear Utility Meteorological Data Users Group Meeting
(NUMUG), April 28 -- 30, 1993, Boston, MA [note: based on work by J.
Tichler, K. Doty, J. Congemi].
J. L. Tichler, H. J. Bernstein, S. F. Bobrowski, R.B.
Melton, A. P. Campbell, D. M. Edwards, P. Kanciruk, P. Singley, 1992.
"Design and Implementation of a Computer Based Site Operations
Log for the ARM Program", presented at SDM 92, A Planning Workshop, Scientific Data Management Workshop, 1992,
The Role of Metadata in Managing Large Environmental Sciences
Data Sets, Salt Lake City, UT, November 3 -- 5, 1992.
L. C. Andrews, H. J. Bernstein, 1989. "The G-6 Method
of Bravais Lattice Determination", poster session, ACA 1989, American Crystallographic Association Meeting, Seattle, WA, July 1989.
L. C. Andrews, H. J. Bernstein, 1988. "Lattices and Reduced
Cells as Points in 6-Space and Selection of Bravais Lattice Type
by Projections", poster session, ACA 1988, American Crystallographic Association Meeting, Philadelphia, PA, July 1988.
H. J. Bernstein, 1987. "Where we Stand in Data Communications
for Engineering R
H. J. Bernstein, 1986. "Digital Communications", presented
as an invited talk in the 1986 New Horizons in Physics and Engineering
Lecture Series on Telecommunications, College at New Paltz,
State University of New York, 9 October 1986.
H. J. Bernstein, 1986. "A Tutorial on Maximum Entropy",
presented as an invited talk, ACA 1986, American Crystallographic Association Meeting, Institute for Cancer Research,
Fox Chase Center, Philadelphia, PA, February 1986.
J. Tichler, H. Bernstein, R. M. Brown, P. Daum, 1983. "A
Data Acquisition System for Environmental Monitoring Aboard a
Twin-Engined Aircraft", Proceedings of the Fifth Symposium on
Meteorological Observations and Instrumentation, April 11 -- 15,
1983, Toronto, Canada.
H. J. Bernstein, J. J. Gould, R. Imossi, J. K. Kopp,
W. A. Love, S. Ozaki, E. D. Platner, M. A. Kramer, 1981. "A Microprocessor-Based
Single Board Computer for High Energy Physics Event Pattern Recognition",
Topical Conference on the Application of Microprocessors to High Energy Physics Experiments, CERN,
Geneva, Switzerland, 4 -- 6 May 1981, poster, BNL #29509.
D. R. Christman, H. L. Atkins, H. J. Bernstein, J. S.
Fowler, B. M. Gallagher, T. Ido, R. M. Lambrecht, R. R. MacGregor,
M. Reivich, T. Ruth, P. Som, A. P. Wolf, 1978. "The Use of PETT
III at Brookhaven", First International Symposium on Positron
Emission Tomography, 1 -- 3 June 1978, Montreal, Canada.
H. J. Bernstein, K. K. Taylor, R. J. Feldmann, G. W. A. Milne, S. R. Heller, 1976. "CRYST: A remote Interactive Computer Network for Retrieval and Display of Crystallographic Data", American Crystallographic Association Summer Meeting, Northwestern University, Evanston, IL, August 1976.
H. J. Bernstein, 1975. "The CRYSNET terminal organization", Proceedings of the 1975 annual
conference, ACM 1975, 87, https://doi.org/10.1145/800181.810288
T. F. Koetzle, L. C. Andrews, H. M. Berman, H. J. Bernstein, E. F. Meyer, Jr., R. K. Stodola, 1974. "Retrieval and Display of Structures from the Protein Data Bank",
American Crystallographic Association Summer Meeting, Penn State U., University Park, PA, August 1974.
E. F. Meyer Jr., C. N. Morimoto, J. Villarreal, H. M.
Berman, H. L. Carrell, R. K. Stodola, T. F. Koetzle, L. C. Andrews,
F. C. Bernstein, H. J. Bernstein, 1974. "CRYSNET, A Crystallographic
Computing Network with Interactive Graphics Display", FASEB Meeting, Aspen Colorado, June 1974.
T. F. Koetzle, L. C. Andrews, H. M. Berman, F. C. Bernstein, H. J. Bernstein, G. H. Campbell, H. L. Carrell, W. C. Hamilton, D. D. Jones, D. Klunk, E. F. Meyer, C. N. Morimoto, B. Rubin, T. V. Willoughby, 1974. "A Crystallographic Computing Network", American Crystallographic Association Spring Meeting, Univerity of California, Berkeley, CA, March 1974.
Earlier Teaching
Fall 2014
MTH 1002A
Fundamentals of Mathematics
MTH 1007A
Operations Research (online course)
MTH 4131A
Advanced Calculus
Spring 2014
CSC 1009
Introduction to Spreadsheets and Data Analysis
CSC 2281
Network Flows and Queuing Theory
MTH 1007A
Operations Research (online course)
Fall 2013
CSC 2025A
Data Structures (online course)
CSC 2060N
Computer Organization (online course)
MTH 1007A
Operations Research (online course)
MTH 1014A
Pre-Calculus (online course)
Spring 2013
CSC 2281A
Network Design and Queuing Theory (online course)
CSC 3072A
Database Systems (online course)
CSC 3971N
Advanced Programming I (online course)
CSC 3982N
Advanced Software Engineering II (online course)
MTH 1014A
Pre-Calculus (online course)
Fall 2012
CSC 1009N
Introduction to Spreadsheets and Data Analysis (online course)
CSC 2060N
Computer Organization (online course)
CSC 3981N
Advanced Software Engineering I (online course)
MTH 1002A
Fundamentals of Mathematics (online course)
Spring 2012
CSC 1023N
Introduction to Computer Science (online course)
CSC 2281A
Network Design and Queuing Theory (online course)
CSC 3080A
Operating Systems (online course)
MTH 1007A
Operations Research (online course)
Fall 2011
CSC 1024N
Introduction to Programming
CSC 3171A
Algorithms
CSC 3971N
Advanced Programming
Spring 2011
CSC 1023N
Introduction to Computer Science
CSC 2025A
Data Structures
CSC 2281A
Network Design
Fall 2010
MTH 1002A
Fundamentals of Mathematics
CSC 1023N
Introduction to Computer Science
CSC 2060N
Computer Organization
Rochester, NY, http://media.rit.edu/faculty/pac8612/1009-541/ProgrammingModule.html
Spring 2010
(On sabbatical)
Fall 2009
(On sabbatical)
Spring 2009
MTH 1007A
Operations Research
CSC 3149A
Compilers
CSC 1009N
Introduction to Spreadsheets and Visual Basic
Fall 2008
NSM 6600
Technologies for Research and Instruction
MTH 1002A
Fundamentals of Mathematics (2 sections)
Spring 2008
CSC 1009N
Introduction to Spreadsheets and Visual Basic
CSC 3962N
Project-Oriented Computer Science
CSC 4962N
Project-Oriented Computer Science Research
Fall 2007
NSM 6600
Technologies for Research and Instruction
CSC 3961N
Project-Oriented Computer Science
CSC 4961N
Project-Oriented Computer Science Research
Spring 2007
CSC 3171A
Algorithms
CSC 3962N
Project-Oriented Computer Science
CSC 4962N
Project-Oriented Computer Science Research
Fall 2006
NSM 6600
Technologies for Research and Instruction
CSC 3961N
Project-Oriented Computer Science
CSC 4961N
Project-Oriented Computer Science Research
Spring 2006
MTH 1002A
Fundamentals of Mathematics
CSC 4181N
Project-Oriented Computer Science I
CSC 4182N
Project-Oriented Computer Science II
Fall 2005
NSM 6600
Technologies for Research and Instruction
CSC 4181N
Project-Oriented Computer Science I
CSC 4182N
Project-Oriented Computer Science II
Spring 2005
CSC 3080
Operating Systems
CSC 4175
Software Engineering
CSC 4177
Senior Project
MTH 1002
Fundamentals of Mathematics
Fall 2004
CSC 1012
Introduction to Computer Science
NSM 6600
Technologies for Research and Instruction
NSM 6602
Scientific Methods and Experimental Design
Spring 2004
CSC 1012
Introduction to Computer Science
CSC 1071
Data Structures
Fall 2003
CSC 1012
Introduction to Computer Science
CSC 1071
Data Structures
Spring 2003
CSC 080
Operating Systems
MTH 002
Fundamentals of Mathematics
MTH 014
Pre-Calculus
Fall 2002
CSC 181
Advanced
Research Topics in Computer Science
CSC 077
Intermediate Java
Programming
CSC 175
Software Engineering
CSC 177
Senior Project
Spring 2002
CSC 080
Operating Systems
CSC 182
Research
Topics in Computer Science
MTH 002
Fundamentals of Mathematics
Fall 01
CSC 012
Introduction to Computer Science
Earlier Occupation
Earlier Service Activities
Consultant
(Aug 2011 -- Aug 2017)
IUCr Diffraction Data Deposition
Working Group (IUCr DDD WG)
International Union of Crystallography (IUCr)
WebMaster
(2001 -- 2015)
Temple Beth El, Patchogue, NY
Member
(Feb 2011 -- Oct 2012 )
Dowling College Middle States Self-Study
Steering Committee
Member
(Nov 2010 -- Aug 2012)
Dowling College Institutional Review Board
Coach
(Sep 2009)
Dowling College ACM Programming Contest team
Assistant Coach
(2008 -- 2009)
Dowling College
ACM Programming Contest team
Coach
(2003 -- 2008)
Dowling College
ACM Programming Contest team
Assistant Coach
(2002 -- 2003)
Dowling College
ACM Programming Contest team
Evaluator
(Aug 2010 -- Feb 2011)
Dowling College School of Aviation
Policy Project on Aviation Education Enhancement
Member
(Spring 2009)
Dowling College Faculty Personnel
Committee
Member
(Feb 2009 -- Apr 2010)
Dowling College NYSUT Negotiating
Committee, Chair Feb 2010 -- Apr 2010
Advisor
(Sep 2003 -- May 2008)
Dowling College Computer Club
Chair
(Sep 2005 -- Jan 2006)
Dowling College Human Subjects
Committee
Webmaster
(May 2003 -- May 2007 )
Dowling College Chapter, NY State
United Teachers
web site (www.dcnysut.org)
Member
(1997 -- 2001 )
Macromolecular CIF (mmCIF) Dictionary
Maintenance Group (IUCr)
Vice-Chairman, NYSERnet Inc.
(1987 -- 1989)
NYSERnet Inc. (NY State Education
and Research Network), New York, NY
Director, NYSERnet Inc.
(1986 -- 1989)
NYSERnet Inc. (NY State Education
and Research Network), New York, NY
Trustee
(1984 -- 1991)
Consortium for Scientific Computing,
Princeton, NJ
Publications
https://aca.scitation.org/doi/10.1063/1.5128498
https://doi.org/10.1107/S2053273319014542
https://basilbiochem.github.io/basil
https://doi.org/10.1107/S2053273319002729
https://doi.org/10.1107/S2053273318015413
http://theaic.org/pub_thechemist_journals/Vol-91-No-1/Vol-91-No1-Article-1.html
https://www.biorxiv.org/content/biorxiv/early/2017/05/24/141770.full.pdf
https://doi.org/10.1107/S1600576716011353
https://doi.org/10.1107/S1600576715021871
https://doi.org/ 10.1007/s10969-015-9199-0 Epub 2015 Nov 16. PubMed PMID: 26573864; PubMed Central PMCID: PMC4684744
http://dx.doi.org/10.1063/1.4918728
https://doi.org/10.1007/s10969-015-9194-5 Epub 2015 Jan 29. PubMed PMID: 25630330; PubMed Central PMCID: PMC4332402.
https://doi.org/10.1107/S1600576714027575
http://www.phenix-online.org/newsletter/CCN_2014_01.pdf#page=12
http://www.phenix-online.org/newsletter/CCN_2014_01.pdf#page=19
https://doi.org/10.1186/1471-2105-15-87 PubMed PMID: 24669788; PubMed Central PMCID: PMC4229977
https://doi.org/10.1107/S1600576713031014 eCollection 2014 Feb 1. PubMed PMID: 24587790; PubMed Central PMCID: PMC3937814.
https://doi.org/10.1107/S1600576713031002 eCollection 2014 Feb 1. PubMed PMID: 24587789; PubMed Central PMCID: PMC3937813. Erratum J. Appl. Cryst. 47:4 1477.
http://arXiv.org/pdf/1305.6561
http://arXiv.org/pdf/1307.1811
http://arXiv.org/pdf/1203.5146
https://doi.org/10.1002/bmb.20450
https://doi.org/10.1038/458404b
https://doi.org/10.1107/S002188980801385X.
Meetings
https://scripts.iucr.org/cgi-bin/paper?S205327331708130X
http://journals.iucr.org/a/issues/2017/a1/00/a54896/a54896.pdf
http://scripts.iucr.org/cgi-bin/paper?S0108767317098452
http://scripts.iucr.org/cgi-bin/paper?S0108767317098130
http://hdrmx.medsbio.org/NIAC_2016/manual2/build/html/classes/applications/NXmx.html
http://hdrmx.medsbio.org/NIAC_2016/manual3/build/html/classes/base_classes/NXtransformations.html
http://www.medsbio.org/meetings/Report_HDRMX_Meeting_2Sep16_19Sep16b.html
http://hdrmx.medsbio.org/Report_HDRMX_Meeting_23Jul16_rev_7Aug16.htm
https://aca.confex.com/aca/2016/webprogrampreliminary/Paper1187.html
https://aca.confex.com/aca/2016/webprogrampreliminary/Paper1396.html
https://aca.confex.com/aca/2016/webprogrampreliminary/Paper1128.html
http://www.medsbio.org/meetings/BNL_May16_HDRMX_Report.pdf
https://www.fasebj.org/doi/abs/10.1096/fasebj.30.1_supplement.601.1
https://www.fasebj.org/doi/abs/10.1096/fasebj.30.1_supplement.1077.1
https://www.fasebj.org/doi/abs/10.1096/fasebj.30.1_supplement.880.8
https://www.fasebj.org/doi/10.1096/fasebj.29.1_supplement.567.20
https://www.fasebj.org/doi/10.1096/fasebj.29.1_supplement.567.11
https://www.fasebj.org/doi/10.1096/fasebj.29.1_supplement.567.12
https://www.fasebj.org/doi/10.1096/fasebj.29.1_supplement.721.22
https://www.fasebj.org/doi/10.1096/fasebj.28.1_supplement.777.3
https://www.fasebj.org/doi/10.1096/fasebj.28.1_supplement.777.2
https://www.fasebj.org/doi/10.1096/fasebj.28.1_supplement.777.1
https://www.fasebj.org/doi/10.1096/fasebj.28.1_supplement.618.26
https://www.fasebj.org/doi/10.1096/fasebj.27.1_supplement.811.1
https://www.fasebj.org/doi/10.1096/fasebj.27.1_supplement.811.2
https://www.fasebj.org/doi/10.1096/fasebj.26.1_supplement.978.7
https://www.fasebj.org/doi/10.1096/fasebj.22.1_supplement.659.1
http://www.bernstein-plus-sons.com/ccsce2007/CCSCNE_2007_HJB_foils.pdf
http://isnatt.org/Conferences/23/Session7.pdf