| OpenRasMol |
Copying and Distribution |
Contents |
Installation Instructions |
| Changes |
Things To Do |
Introduction |
Source Code and Binaries |
| RasMol Manual |
Spanish Translation of RasMol Manual|
Release README |
General Notice
Creative endeavors depend on the lively exchange of ideas.
There are laws and customs which establish rights and
responsibilities for authors and the users of what authors create. This
notice is not intended to prevent you from using the software and
documents in this package, but to ensure that there are no
misunderstandings about terms and conditions of such use.
Please read the following notice carefully. If you do not understand any
portion of this notice, please seek appropriate professional legal
advice before making use of the software and documents included in this
software package. In addition to whatever other steps you may be obliged
to take to respect the intellectual property rights of the various
parties involved, if you do make use of the software and documents
in this package, please give credit where credit is due by citing this
package, its authors and the URL or other source from which you obtained it,
or equivalent primary references in the literature with the same authors.
Some of the software and documents included
within this software package are the intellectual property of various
parties, and placement in this package does not in any way
imply that any such rights have in any way been waived
or diminished.
With respect to any software or documents for which a
copyright exists, ALL RIGHTS ARE RESERVED TO THE OWNERS
OF SUCH COPYRIGHT.
Even though the authors of the various documents
and software found here have made a good faith
effort to ensure that the documents are correct and
that the software performs according to its
documentation, and we would greatly appreciate
hearing of any problems you
may encounter, the programs and documents
any files created by the programs are provided
**AS IS** without any warranty as to
correctness, merchantability or fitness
for any particular or general use.
THE RESPONSIBILITY FOR ANY ADVERSE
CONSEQUENCES FROM THE USE OF PROGRAMS
OR DOCUMENTS OR ANY FILE OR FILES CREATED BY
USE OF THE PROGRAMS OR DOCUMENTS
LIES SOLELY WITH THE USERS OF THE PROGRAMS
OR DOCUMENTS
OR FILE OR FILES AND NOT WITH AUTHORS OF
THE PROGRAMS OR DOCUMENTS.
Subject to your acceptance of the conditions stated above, and your
respect for the terms and conditions stated in the notices below,
if you are not going to make any modifications or create derived works,
you are given permission to freely copy and distribute this package,
provided you do the following:
- 1. Either include the complete documentation, especially the file
NOTICE, with what you distribute or
provide a clear indication where people can get a copy of the
documentation; and
- 2. Give credit where credit is due citing the version and
original authors properly; and
- 3. Do not give anyone the impression that the original authors
are providing a warranty of any kind.
In addition, you may also modify this package and create derived works
provided you do the following:
- 4. Explain in your documentation how what you did differs from
this version of RasMol; and
- 5. Make your modified source code available.
RasMol 2.6 Notice
Information in this document is subject to change without notice and does
not represent a commitment on the part of the supplier. This package is
sold/distributed subject to the condition that it shall not, by way of
trade or otherwise, be lent, re-sold, hired out or otherwise circulated
without the supplier's prior consent, in any form of packaging or cover
other than that in which it was produced. No part of this manual or
accompanying software may be reproduced, stored in a retrieval system on
optical or magnetic disk, tape or any other medium, or transmitted in any
form or by any means, electronic, mechanical, photocopying, recording or
otherwise for any purpose other than the purchaser's personal use.
This product is not to be used in the planning, construction, maintenance,
operation or use of any nuclear facility nor the flight, navigation or
communication of aircraft or ground support equipment. The author shall
not be liable, in whole or in part, for any claims or damages arising
from such use, including death, bancruptcy or outbreak of war.
The IUCr Policy for the Protection and the Promotion
of the STAR File and CIF Standards
for Exchanging and Archiving Electronic Data
Overview
The Crystallographic Information File (CIF)[1] is a standard for information
interchange promulgated by the International Union of Crystallography (IUCr).
CIF (Hall, Allen & Brown, 1991) is the recommended method for submitting
publications to Acta Crystallographica Section C and reports of crystal
structure determinations to other sections of Acta Crystallographica and many
other journals. The syntax of a CIF is a subset of the more general STAR
File[2] format. The CIF and STAR File approaches are used increasingly in
the structural sciences for data exchange and archiving, and are having a
significant influence on these activities in other fields.
Statement of intent
The IUCr's interest in the STAR File is as a general data interchange
standard for science, and its interest in the CIF, a conformant derivative
of the STAR File, is as a concise data exchange and archival standard
for crystallography and structural science.
Protection of the standards
To protect the STAR File and the CIF as standards for interchanging and
archiving electronic data, the IUCr, on behalf of the scientific community,
- holds the copyrights on the standards themselves,
- owns the associated trademarks and service marks, and
- holds a patent on the STAR File.
These intellectual property rights relate solely to the interchange
formats, not to the data contained therein, nor to the software used
in the generation, access or manipulation of the data.
Promotion of the standards
The sole requirement that the IUCr, in its protective role, imposes on
software purporting to process STAR File or CIF data is that the following
conditions be met prior to sale or distribution.
- Software claiming to read files written to either the STAR File or the
CIF standard must be able to extract the pertinent data from a file
conformant to the STAR File syntax, or the CIF syntax, respectively.
- Software claiming to write files in either the STAR File, or the CIF,
standard must produce files that are conformant to the STAR File syntax,
or the CIF syntax, respectively.
- Software claiming to read definitions from a specific data dictionary
approved by the IUCr must be able to extract any pertinent definition
which is conformant to the dictionary definition language (DDL)[3]
associated with that dictionary.
The IUCr, through its Committee on CIF Standards, will assist any developer
to verify that software meets these conformance conditions.
Glossary of terms
- [1] CIF:
- is a data file conformant to the file syntax defined at
http://www.iucr.org/iucr-top/cif/spec/index.html
- [2] STAR File:
- is a data file conformant to the file syntax defined at
http://www.iucr.org/iucr-top/cif/spec/star/index.html
- [3] DDL:
- is a language used in a data dictionary to define data
items in terms of "attributes". Dictionaries currently
approved by the IUCr, and the DDL versions used to
construct these dictionaries, are listed at
http://www.iucr.org/iucr-top/cif/spec/ddl/index.html
Last modified: 30 September 2000
IUCR Policy Copyright © 2000 International Union of Crystallography
CBFlib V0.1 Notice
The following Diclaimer Notice applies to CBFlib V0.1, from which this
code is in part is derived.
- The items furnished herewith were developed under the
sponsorship of the U.S. Government. Neither the U.S., nor the
U.S. D.O.E., nor the Leland Stanford Junior University, nor
their employees, makes any warranty, express or implied, or
assumes any liability or responsibility for accuracy,
completeness or usefulness of any information, apparatus,
product or process disclosed, or represents that its use will
not infringe privately-owned rights. Mention of any product,
its manufacturer, or suppliers shall not, nor is it intended
to, imply approval, disapproval, or fitness for any particular
use. The U.S. and the University at all times retain the right
to use and disseminate the furnished items for any purpose
whatsoever.
Notice 91 02 01
CIFPARSE Notice
Portions of this software are loosely based on the CIFPARSE software
package from the NDB at Rutgers university (see
http://ndbserver.rutgers.edu/NDB/mmcif/software). CIFPARSE is part of
the NDBQUERY application, a program component of the Nucleic Acid
Database Project [ H. M. Berman, W. K. Olson, D. L. Beveridge, J. K.
Westbrook, A. Gelbin, T. Demeny, S. H. Shieh, A. R. Srinivasan, and B.
Schneider. (1992). The Nucleic Acid Database: A Comprehensive
Relational Database of Three-Dimensional Structures of Nucleic Acids.
Biophys J., 63, 751-759.], whose cooperation is gratefully
acknowledged, especially in the form of design concepts created by J.
Westbrook.
Please be aware of the following notice in the CIFPARSE API:
This software is provided WITHOUT WARRANTY OF MERCHANTABILITY OR
FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR
IMPLIED. RUTGERS MAKE NO REPRESENTATION OR WARRANTY THAT THE
SOFTWARE WILL NOT INFRINGE ANY PATENT, COPYRIGHT OR OTHER
PROPRIETARY RIGHT.
| Copying and Distribution |
Contents |
Installation Instructions |
| Changes |
Things To Do |
Introduction |
Source Code and Binaries |
| RasMol Manual |
Release README |
Updated 18 January 2001.
yaya@bernstein-plus-sons.com